Stars
A resource repository for machine unlearning in large language models
Pre-indexed code knowledge graph, auto syncs on code changes, for Claude Code, Codex, Gemini, Cursor, OpenCode, AntiGravity, Kiro, and Hermes Agent — fewer tokens, fewer tool calls, 100% local
ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model (Connecting text and protein)
A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.
A git repository with hands-on material for Data Science on KSL plattaforms
A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and genomics. This repository compiles key academic papers that …
SecureDNA client and server components monorepo
a long read simulator that can imitate many types of read problems
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
Introduction to Shell for Bioinformatics
EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
Automated machine learning for analyzing, interpreting, and designing biological sequences
Do massive Hamming distance calculation rapidly.
plot chord diagram with matplotlib
create sankey diagrams with matplotlib
Rapid generation of high-quality structure figures for publication with PyMOL-PUB
Leveraging network motifs to improve artificial neural networks
High-Performance Symbolic Regression in Python and Julia
Productive, portable, and performant GPU programming in Python.
An Efficient DNA Clustering algorithm based on Tree Structure.
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
A PyTorch Basecaller for Oxford Nanopore Reads
Customized batch exhibition of three-dimensional molecules based on pymol framework